GgaEX6008190 @ galGal3
Exon Skipping
Gene
ENSGALG00000014624 | F1N8P2_CHICK
Description
NA
Coordinates
chr10:19380624-19416533:-
Coord C1 exon
chr10:19416427-19416533
Coord A exon
chr10:19400787-19400943
Coord C2 exon
chr10:19380624-19381039
Length
157 bp
Sequences
Splice sites
3' ss Seq
AATGACCTTTGTTTTTTCAGGAT
3' ss Score
10.98
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGCCAAAATGTTTAATTATGCTCGCTGGGAGAAAACCTGCAATTTACTCTTTTTCATCTTTTCTGTCGCATTCTTCATCACAAGAATCATCCTGTTCCCCTTCTG
Seq A exon
GATTCTGCGTGCCACGTTGTATCAACCTACATTCTACTCCACCACTCCAGTCATAGCGTATTTCTTATTCAATGGGCAGCTATTGATCCTTCAAGGCTTACATTTATATTGGGGTTACTTGATCTTCAAGATTTTGAAAAGGTTCATTTTCTTAAAG
Seq C2 exon
GACTTGAAAGATGACCGGAGTGATGAAGAGGAAGAAGATTCTGTTACAGATAACGAAGAGGAGTCCACAAATGGCAATAAGAATGGCTGTGGGTCAGGCAAACATCTCCTTAACAGCAGTCACCACTAGCCCTCTCCTGCCTCACTTCTTACAGTGATTTCTACTCCGTTTTTAACCCAACTTATGGGATAAAACTTAAGTCAAATTGCTTACGAGAGGCTGGGATTGATTTATTGCTGGCTACTGGGCCTGGAAAAAAGCCCAGTATACAGGGAGGGGAAAATTGCATAACATGACAAAATGTGTTAATGACCCACTTGAATCATTGTTTAGCATTTGGAAAGGTGCTTGGACACGGACTGCTCCAATCTCACAGTGCTCAACAAGGTGAAAGTGTCAGATCATTTAGTATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(0.1=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTCGCTGGGAGAAAACC
R:
ACTGTAAGAAGTGAGGCAGGAGA
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]