MmuEX6011424 @ mm9
Exon Skipping
Gene
ENSMUSG00000030510 | Lass3
Description
LAG1 homolog, ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:73934475-73968578:+
Coord C1 exon
chr7:73934475-73934581
Coord A exon
chr7:73940672-73940825
Coord C2 exon
chr7:73966576-73968578
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTCCCAACTTTTCCCACAGGAT
3' ss Score
11.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TCTGCTAAGATGTTTTCCTATGCTGGATGGAAGCAGACGTGTAACACCCTGTTCTTCATCTTCACCGTCGTCTTCTTCATTAGCCGATTCATTATTTTTCCATTCTG
Seq A exon
GATTCTGTACTGCACTCTGATCCTGCCTTTGCACTATCTCGAGCCCTTCTTCTCCTACATCTTCCTCAACCTCCAACTCATGATCCTTCAGGGCCTCCACGTTTACTGGGGTTACTTTATCCTGAAGATGCTCAACAGATGCATATTCACGCAG
Seq C2 exon
AACGTCCAGGATGTGAGGAGTGACAACGAAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAAGCAGAGAGCACCAAGGGCAAAGAGACAGAGTATTTGAAGAATGGCCTTGGGACCAACAGGCATCTCATTGCCAATGGTCAGCATGGCCGTTAGCTTGAAGCACAATGTGGCGCCAGGACACTGGGAGGCCGGAACTGCTCCTCTATCCACTGCTGTGGACCCACAGAGACCCCATTTTGCCTTTTATTTTATTTTATTTTATTTTATTTTATTGAGATGGAGTCTCCTATGTTGCTCAAGGTGGCCCCCAACTCAGTCACCCTGACTGTGATAAAATGTTAAGAAGTGGAATACCCGTGGATTGGTCAGCAGTTAAGTCAGGCTGGTCAGAGTTCAGAGATTTCTCCAGGCAGGGTCAGTTCGTCAGTTGTTGTTGTGTTTCCCCCCTTCCAGAATTTGAAGCACTTGACTTTCTCAGGAACTCGTTTTCTCTGAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.420
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGACGTGTAACACCC
R:
GTGCTTCAAGCTAACGGCCAT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: