MmuEX6011424 @ mm10
Exon Skipping
Gene
ENSMUSG00000030510 | Cers3
Description
ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:66789589-66823691:+
Coord C1 exon
chr7:66789589-66789695
Coord A exon
chr7:66795786-66795939
Coord C2 exon
chr7:66821690-66823691
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTCCCAACTTTTCCCACAGGAT
3' ss Score
11.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TCTGCTAAGATGTTTTCCTATGCTGGATGGAAGCAGACGTGTAACACCCTGTTCTTCATCTTCACCGTCGTCTTCTTCATTAGCCGATTCATTATTTTTCCATTCTG
Seq A exon
GATTCTGTACTGCACTCTGATCCTGCCTTTGCACTATCTCGAGCCCTTCTTCTCCTACATCTTCCTCAACCTCCAACTCATGATCCTTCAGGGCCTCCACGTTTACTGGGGTTACTTTATCCTGAAGATGCTCAACAGATGCATATTCACGCAG
Seq C2 exon
AACGTCCAGGATGTGAGGAGTGACAACGAAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAAGCAGAGAGCACCAAGGGCAAAGAGACAGAGTATTTGAAGAATGGCCTTGGGACCAACAGGCATCTCATTGCCAATGGTCAGCATGGCCGTTAGCTTGAAGCACAATGTGGCGCCAGGACACTGGGAGGCCGGAACTGCTCCTCTATCCACTGCTGTGGACCCACAGAGACCCCATTTTGCCTTTTATTTTATTTTATTTTATTTTATTTTATTGAGATGGAGTCTCCTATGTTGCTCAAGGTGGCCCCCAACTCAGTCACCCTGACTGTGATAAAATGTTAAGAAGTGGAATACCCGTGGATTGGTCAGCAGTTAAGTCAGGCTGGTCAGAGTTCAGAGATTTCTCCAGGCAGGGTCAGTTCGTCAGTTGTTGTTGTGTTTCCCCCCTTCCAGAATTTGAAGCACTTGACTTTCTCAGGAACTCGTTTTCTCTGAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.420
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGACGTGTAACACCC
R:
GTGCTTCAAGCTAACGGCCAT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types