BtaEX6076491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006987 | LASS3
Description
Bos taurus ceramide synthase 3 (CERS3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099389]
Coordinates
chr21:6342706-6420992:+
Coord C1 exon
chr21:6342706-6342812
Coord A exon
chr21:6363565-6363718
Coord C2 exon
chr21:6418789-6420992
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCATTTGTTTGGTTTTTCAGGAT
3' ss Score
10.79
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TCTGCTAAGATGTTTTCTTATGCCGGATGGAAGCAAACCTGTAACACTCTGTTTTTCATCTTCTCCACCGTGTTTTTGATCAGTCGCCTCATTATTTTTCCCTTCTG
Seq A exon
GATTTTATATTGCACGCTGATTCTGCCTCTGCACTACCTTCAACCCTTCTTTTCATACATCTTCCTCAACCTACAGCTCATGGTCCTCCAAGTTCTTAATCTTTACTGGAGTTACTTGATCCTGAAGATGCTCAAAAGAAGTATATTCACGAAG
Seq C2 exon
AGCATCCGGGATGTGAGAAGTGACAGTGAGGATGAGTATGAAGAGGAAGAAGAGGAGGAAGAGAAGAAGAAAGAAGCCAGGGAAGGCAAAGAGACAGACCGTTTGAAGAACAGCCTTGGAGCCAACAGGCACCTCATCCCCAATGGTCAGCATGGCTATTAGCTTGAAGGCCACGTAGCTCCCAGTGCACAGCGCACCACGAGGGCTGCTGGGAGGGGGACGTGCTCCCTCCTCCACTGCTGTGGCCTCAGGACCCAGAGGGACCACAGATTTTGCCCTTCTTTCGTTATTACCACCTTCCCCCCTCCTAAGATATATTTAACAGAATGTTGTTTTTGTGTTAAAATGTTGAATATAAGCATACCAGTGGATTTTACTGGAGTTAGGACTCAGGCTTCATAGATTTCTCCAGAGAACCCTTCTAGTTCTAATTGTGCCCATTCATGCATTTGAGACACTTGGAGCCAACTTGGTTGTGGGCCTTCCCCTTCCCACCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006987-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.491
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCGGATGGAAGCAAACC
R:
CCATGCTGACCATTGGGGATG
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]