GgaEX1014922 @ galGal4
Exon Skipping
Gene
ENSGALG00000014624 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr10:16777437-16797358:-
Coord C1 exon
chr10:16797252-16797358
Coord A exon
chr10:16795706-16795862
Coord C2 exon
chr10:16777437-16780429
Length
157 bp
Sequences
Splice sites
3' ss Seq
AATGACCTTTGTTTTTTCAGGAT
3' ss Score
10.98
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGCCAAAATGTTTAATTATGCTCGCTGGGAGAAAACCTGCAATTTACTCTTTTTCATCTTTTCTGTCGCATTCTTCATCACAAGAATCATCCTGTTCCCCTTCTG
Seq A exon
GATTCTGCGTGCCACGTTGTATCAACCTACATTCTACTCCACCACTCCAGTCATAGCCTATTTCTTATTCAATGGGCAGCTATTGATCCTTCAAGGCTTACATTTATATTGGGGTTACTTGATCTTCAAGATTTTGAAAAGGTTCATTTTCTTAAAG
Seq C2 exon
GACTTGAAAGATGACCGGAGTGATGAAGAGGAAGAAGATTCTGTTACAGATAACGAAGAGGAGTCCACAAATGGCAATAAGAATGGCTGTGGGTCAGGCAAACATCTCCTTAACAGCAGTCACCACTAGCCCTCTCCTGCCTCACTTCTTACAGTGATTTCTACTCCGTTTTTAACCCAACTTATGGGATAAAACTTAAGTCAAATTGCTTACGAGAGGCTGGGATTGATTTATTGCTGGCTACTGGGCCTGGAAAAAAGCCCAGTATACAGGGAGGGGAAAATTGCATAACATGACAAAATGTGTTAATGACCCACTTGAATCATTGTTTAGCATTTGGAAAGGTGCTTGGACACGGACTGCTCCAATCTCACAGTGCTCAACAAGGTGAAAGTGTCAGATCATTTAGTATCCCGTTGATTTTGACTGGTTTTCAATCTGATGTATTTTATCAAGCAGTTTCATTCATAGGTGCTTCATGGGAGGTACCTAGTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624_MULTIEX1-10/10=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(17.9=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(22.1=81.1)
C2:
NA
Main Skipping Isoform:
ENSGALT00000023574fB6118
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTCGCTGGGAGAAAACC
R:
ACTGTAAGAAGTGAGGCAGGAGA
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]