DreEX6003775 @ danRer10
Exon Skipping
Gene
ENSDARG00000078541 | CERS3 (2 of 2)
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr7:9698250-9713045:+
Coord C1 exon
chr7:9698250-9698356
Coord A exon
chr7:9698447-9698600
Coord C2 exon
chr7:9712702-9713045
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCATGCGTTTTAATTGCAGGAT
3' ss Score
8.84
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TCTGCCAAGATTTTTAACTACGCCAAATGGTTCAAAACTTGCAACGGCATCTTTGTAGTGTTTGCCGCCGTCTTTATAATCACCAGACTCATCATCTTTCCCTTTTG
Seq A exon
GATCATTCACTGCACGTGGGTTTACCCGCCTTTGTATTACCCACCGTTCTTTGGATATTACTTTTTTAACTTCATGCTCATCGTCCTCTTGATGCTTCACATATTCTGGGCGTATCTGATTCTACGTATGGTCAAGATGTTCCTTTTTGGAAGT
Seq C2 exon
TTAACCAAAGACGAGAGAAGTGATAATGAAGAAGACGAGGAAGACGACGGGGAGACCAGCATGACTGAGGACAATGATGAACATGTGAAAGTGACCAATGGCTGTAGAGGAGGAGGCGGGGCTAATCATCACTGACAACTCTTTCTCAAACTATGAAGGACGTTGAATTTCCCTCAGGGATGCAAGGAGCCAAAAACATACTTTTGATTTATCGTCATATAGAGACTGTGCCAGAGGACCTGTCTAAACAAATTGCATCTTTTAATAAAATTGAAAAAGCCTTTTCCCCCCAAAGGGCTTAACTGGAGACACTGTGTGTCTTGGCTGCTTCAAACGTTTTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078541-'8-16,'8-15,9-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTTGCCGCCGTCTTTAT
R:
TTTTGGCTCCTTGCATCCCTG
Band lengths:
246-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]