DreEX6003776 @ danRer10
Exon Skipping
Gene
ENSDARG00000078541 | CERS3 (2 of 2)
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr7:9693586-9698600:+
Coord C1 exon
chr7:9693586-9693714
Coord A exon
chr7:9698250-9698356
Coord C2 exon
chr7:9698447-9698600
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATGTGCTATCTCTTTGCAGTCT
3' ss Score
10.22
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GACTTTAAAGAGCAGATCATCCATCATTGGGCCACACTGACACTCTTGGCTTTCTCCTGGTGTGGAAACTACATCCGCGTCGGGACATTGGTCCTGCTTATTCACGACTCCTCAGACATCCTTCTGGAG
Seq A exon
TCTGCCAAGATTTTTAACTACGCCAAATGGTTCAAAACTTGCAACGGCATCTTTGTAGTGTTTGCCGCCGTCTTTATAATCACCAGACTCATCATCTTTCCCTTTTG
Seq C2 exon
GATCATTCACTGCACGTGGGTTTACCCGCCTTTGTATTACCCACCGTTCTTTGGATATTACTTTTTTAACTTCATGCTCATCGTCCTCTTGATGCTTCACATATTCTGGGCGTATCTGATTCTACGTATGGTCAAGATGTTCCTTTTTGGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078541-'7-15,'7-14,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATCATCCATCATTGGGC
R:
ACGTAGAATCAGATACGCCCAGA
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]