MmuEX6072536 @ mm10
Exon Skipping
Gene
ENSMUSG00000015714 | Cers2
Description
ceramide synthase 2 [Source:MGI Symbol;Acc:MGI:1924143]
Coordinates
chr3:95321831-95322473:+
Coord C1 exon
chr3:95321831-95321959
Coord A exon
chr3:95322127-95322233
Coord C2 exon
chr3:95322320-95322473
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATTTATTTTTATAGTCT
3' ss Score
7.14
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATTTTAAGGAACAGATCATCCACCATGTGGCCACTATCATTCTCCTCTGCTTCTCCTGGTTTGCCAATTACGTCCGGGCAGGGACCCTCATCATGGCTCTGCATGACGCTTCTGACTACCTGCTGGAG
Seq A exon
TCTGCCAAGATGTTTAACTACGCGGGATGGAAGAACACCTGCAACAACCTCTTCATTGTGTTCGCCATCGTTTTCATCATCACTCGGCTGGTTATCATGCCTTTCTG
Seq C2 exon
GATCCTACACTGCACGATGATATACCCACTGGAGCTCTACCCTGCCTTCTTTGGCTATTATTTCTTCAATTTTATGATGGCAGTGCTACAGATGCTCCATATCTTCTGGGCCTACTTCATTCTGCGTATGGCCCACAAGTTCATAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015714-'17-26,'17-23,22-26=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(16.9=88.2)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACTATCATTCTCCTCTGC
R:
ATGAACTTGTGGGCCATACGC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types