DreEX0021061 @ danRer10
Exon Skipping
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1367472-1370659:+
Coord C1 exon
chr16:1367472-1367600
Coord A exon
chr16:1368032-1368138
Coord C2 exon
chr16:1370506-1370659
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTATCTCTCAGTCA
3' ss Score
9.47
5' ss Seq
CCGGTACAT
5' ss Score
5.7
Exon sequences
Seq C1 exon
GACTTTAAAGAGCAGATCATCCATCATGTTGCCACCATCCTGCTCATCAGCTTCTCCTGGTGTGTGAACTACATCCGAGCAGGAACGCTCATCATGTTCATGCACGACTCAGCCGACTATCTGCTGGAG
Seq A exon
TCAGCTAAGATGTTTAACTACGCCCGATGGAAGAACGCATGCAACTACATCTTCATCCTGTTTGCTGCCATCTTCATCGTCACACGCCTCATCATCTTCCCTTTCCG
Seq C2 exon
GATCATGTACTGTACGTGGGTGTATCCCGTGACGCTCTACCCTCCGTTCTTCGGATATTACTTCTTTAACGGTCTGCTGATGGTTCTGCTGTGTCTGCACATGTTCTGGGCTGCGCTGATCATACGCCTGGCCTTCCGCTTCCTCAGCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGTTGCCACCATCCTGC
R:
GAAGGCCAGGCGTATGATCAG
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]