HsaEX1008395 @ hg38
Exon Skipping
Gene
ENSG00000143418 | CERS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:HGNC:14076]
Coordinates
chr1:150966476-150967202:-
Coord C1 exon
chr1:150967074-150967202
Coord A exon
chr1:150966756-150966862
Coord C2 exon
chr1:150966476-150966629
Length
107 bp
Sequences
Splice sites
3' ss Seq
GATGGGGGCTCTCTATGCAGTCA
3' ss Score
5.16
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATTTCAAGGAACAGATCATCCACCATGTGGCCACCATCATTCTCATCAGCTTTTCCTGGTTTGCCAATTACATCCGAGCTGGGACTCTAATCATGGCTCTGCATGACTCTTCCGATTACCTGCTGGAG
Seq A exon
TCAGCCAAGATGTTTAACTACGCGGGATGGAAGAACACCTGCAACAACATCTTCATCGTCTTCGCCATTGTTTTTATCATCACCCGACTGGTCATCCTGCCCTTCTG
Seq C2 exon
GATCCTGCATTGCACCCTGGTGTACCCACTGGAGCTCTATCCTGCCTTCTTTGGCTATTACTTCTTCAATTCCATGATGGGAGTTCTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418-'23-29,'23-27,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGGCCACCATCATTC
R:
TATGAACTTGTGGGCCATGCG
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains