RnoEX6010575 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196494197-196494825:+
Coord C1 exon
chr2:196494197-196494325
Coord A exon
chr2:196494479-196494585
Coord C2 exon
chr2:196494672-196494825
Length
107 bp
Sequences
Splice sites
3' ss Seq
CAGATGGACTATTTCTACAGTCT
3' ss Score
1.52
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATTTTAAGGAACAGATCATCCACCATGTGGCCACCATCATTCTCCTCTGCTTCTCCTGGTTTGCCAATTATGTCCGAGCAGGGACCCTCATCATGGCTCTGCATGACTCTTCCGACTACCTGCTGGAG
Seq A exon
TCTGCCAAGATGTTTAACTACGCAGGATGGAAAAACACCTGCAACAACCTCTTCATTGTCTTCGCCGTCGTTTTCATCATCACTCGACTGGTTATCATGCCCTTCTG
Seq C2 exon
GATCCTCCACTGCACAATGATATACCCACTGGAGTTCTACCCTGCCTTCTTTGGCTATTACTTCTTCAATTCCATGATGGTAGTGCTACAGATGCTCCATGTCTTCTGGGCCTACTTCATTGTGCGCATGGCCCACAAGTTCATAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGGCCACCATCATTC
R:
TATGAACTTGTGGGCCATGCG
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]