DreEX6097199 @ danRer10
Exon Skipping
Gene
ENSDARG00000031387 | cers4a
Description
ceramide synthase 4a [Source:ZFIN;Acc:ZDB-GENE-020808-1]
Coordinates
chr22:4344335-4348731:+
Coord C1 exon
chr22:4344335-4344441
Coord A exon
chr22:4346475-4346631
Coord C2 exon
chr22:4348163-4348731
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTTTCATGTTTGATTTGCAGAAT
3' ss Score
9.13
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCAGCCAAGATGTTTAACTACGCTGGATGGAGGAAGACCTGCGATGCCCTGTTTGTTGTTTTCGCTGCAGTTTTCTTAGTAACTCGCCTTATAGTTTTCCCTTTTAG
Seq A exon
AATCGTCTACACCGCTGTGGTGGATTCATTGGACGTATTTTCTCCATACCCTGGCTATTATTTCTTTAACGGCCTGTTACTGGTTCTTCAAGCTCTGCACATCTTTTGGGCTTGGCTGATTCTTCGAATGGTTCACAAATTTGTCTTTTTAGGCAAA
Seq C2 exon
GTGGAACGAGATGAACGGAGTGACGATGAAAGCGAGCCTGATGAGGATGATGAAGTCGGAGAAGAAGAAGAAGAGCGCAGCTGGGAGCACAAAAAGGGTGCACTTAATTCAAAACTGGCTTCTTTGGCCAATAACTGTGTTTTGAACAATTTAACGAACCAGAGACAAAAAATGAATAGTAGAACACTGAAGGAGAGATAGTGAATCCACTGTATGCATTTAAAGAGACAGTTCACCCAAAAATAAAAATGAGTTTCCTTCTGTTGAACACAATGAAGATATTCTGAAGAATGGTGGAAAAGACAACCACTGACTACAATAATACTTTTGGACATCATTTTCTGCTTTTCCCCAAACATTCTTCAAATTATCTTATTTTATGTTCAACAGAAAAAAACTACAATCTTTAAAACCACTTGAGCGTGAGTAAAAGAAAGGTGAACTATCCCTTTAAGTGTTTCGCTTTTAACTCACTTTCTTAGCTTTCTTGTTTGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031387-'12-18,'12-16,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.455
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGATGTTTAACTACGCTGG
R:
ACACAGTTATTGGCCAAAGAAGC
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]