BtaEX0020626 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004970 | LRRC24
Description
Bos taurus leucine rich repeat containing 24 (LRRC24), mRNA. [Source:RefSeq mRNA;Acc:NM_001083678]
Coordinates
chr14:1604105-1607472:+
Coord C1 exon
chr14:1604105-1604344
Coord A exon
chr14:1606792-1607042
Coord C2 exon
chr14:1607194-1607472
Length
251 bp
Sequences
Splice sites
3' ss Seq
CCTGCCAACCTGTGTTTCAGGAG
3' ss Score
8.64
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGACCGAGTCCCGACGCCGGCAGGGGCGGGGTCTCTGGGGCCCTACTCCCTCCACACACCCCCGGCCTGGGGCGTTTTCGTCCTCTGGTCTGCCTGGCCCTCGCGACGACGGATCGGGGCGGCCGGGCGGGAGGCGCGGGGGCTCCAGTGCGCGAGCCCGAGCGGCGCCCGTCCCTCCCCCGCTGGGTGCTGCTCTGTGGGCCGGGGTTCGGCGGGGGAGCCGCGCCGCGGGAGCGTCAG
Seq A exon
GAGTTGCATCCCACCGGGGCCGGACTGTAGGGAGGCTGCTGGAAAGGCTGCAGGCTTGTGCCCCGCGGCCGGTCCCGCGAGAGATGGCCCCAGGGGCGCCTGCACTGCTGCTATTGTCGCTGCTGTCTCTGCCGGGTCTCCCGCCTCGCGCTGCCGCCTGCCCCGCTGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGCGGTGCTCTGCGACTGCGCGTAGTCCCGCCTGGAATCCCACCCGGGACGCAG
Seq C2 exon
ACGCTGTTCCTGCAGGACAACAGCATCGCGCGCCTGGAGCCGGGCATCCTGGCGCCCCTCGCCTCCCTGCGCCATCTCTACCTGCACAACAACAGCCTACACGCCCTGGAGTCGGGCGCCTTCCGCACGCAGTCGCGCCTGCTGGAACTGGCGCTCACTGGCAACCGGCTGCGCGGCTTGCGCGTCGGTGCTTTCGCAGGCCTGGCCCAACTGCGCGTGCTCTACCTAGCTGGCAACCAGCTGGTACAGCTGCTGGATTTCACCTTCCTACACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004970-'0-6,'0-5,3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138551=LRR_8=PU(5.9=5.4)
C2:
PF138551=LRR_8=PD(90.2=49.5),PF127992=LRR_4=WD(100=50.5),PF138551=LRR_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCCTCCACACACCCC
R:
TGTAGGCTGTTGTTGTGCAGG
Band lengths:
299-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development