MmuEX0026962 @ mm9
Exon Skipping
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76548652-76550354:-
Coord C1 exon
chr15:76550226-76550354
Coord A exon
chr15:76549082-76549329
Coord C2 exon
chr15:76548652-76548930
Length
248 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCTAACCTGTTTCAGGAG
3' ss Score
6.5
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCAGTTACATCTGTTACATCTGGGAACCAAGGAGAGCCCAATGGAGGCTGCCGTGCCAGTGATGGGACTGTCGTGCCAGTGACGAGCAGGAGGCTCTCAGTATAGGCACAGGAAGAGGCCTAGGGCAAG
Seq A exon
GAGGCGCATCCTATCCAGGTCCATTCCCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCTAAGGGCCCCCACGCTGCTGCTGCTACTGCTGGGGTTATTGTTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACTGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCTCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
Seq C2 exon
ACACTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCTCCCTGGCACCTCTTGCTGCCCTGCGCCACCTCTACCTGCACAACAATACCCTGCGTGCGCTGGAGTCCGGTGCCTTCCGCGCACAGCCTCGCCTGCTTGAACTGGCGCTCACTGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCATTTGTGGGCTTGGTCCAGCTTCGTGTGCTTTACCTGGCTGGAAACCAGCTGGCAAAGCTGCTGGATTTCACCTTCTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138551=LRR_8=WD(100=63.4),PF138551=LRR_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCACAGGAAGAGGCCTAG
R:
GGCAGGTGCAAGAAGGTGAAA
Band lengths:
305-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types