RnoEX0050840 @ rn6
Exon Skipping
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117782874-117784638:-
Coord C1 exon
chr7:117784524-117784638
Coord A exon
chr7:117783307-117783554
Coord C2 exon
chr7:117782874-117783152
Length
248 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCTAACCTGTTTCAGGAG
3' ss Score
6.5
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTCCCGAGTTACGTTCTGTTGCATCTGGGAACCGAGGAGAGCCCAGTGAAGGCTGCCGTGACAATGAAGAGTAAAAGGATCTCAGTGTAGGCACAGGAAGAGGCCTAGGGCAAG
Seq A exon
GAGGCGCATCCCATCCGGGTCCATTCTCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCCAGGACCCCCCGCGCTGCTGCTGCTACTGCTGGGTTTATTGCTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACCGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCCCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
Seq C2 exon
ACGCTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCGCCCTGGCACCGCTTGCTGCCCTGCGACACCTCTACCTGCATAACAATACCCTGCGGGCGCTGGAGTCTGGCGCCTTTCGTGCACAGCCCCGCCTGCTTGAACTGGCGCTGACCGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCCTTTGTGGGCCTGGTCCAGCTTCGAGTGCTTTACCTGGCTGGAAACCAGCTGGCGAAGCTGCTAGATTTCACCTTTTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204_MULTIEX1-3/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGTGACAATGAAGAGT
R:
GGTTTCCAGCCAGGTAAAGCA
Band lengths:
301-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]