BtaEX0020870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86213062-86214607:-
Coord C1 exon
chr10:86214588-86214607
Coord A exon
chr10:86214096-86214135
Coord C2 exon
chr10:86213062-86213175
Length
40 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCGTTTCTGTGCAGGTG
3' ss Score
11.63
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGACTCTCAGGCCAGCCAG
Seq A exon
GTGACAACCAGTGTTACCCAGCTATCCACCTGGGTCCCAG
Seq C2 exon
GAGGTGCCCTGGGAACACCAACACCATCAGTGCCTGAACAGGGGATCCCGGAGGCCAGGGAAGAAGCACAAGTGACTGCTCCCACCAATGTGCTGGTGACCCCAGCGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACTCTCAGGCCAGCC
R:
TGGGGTCACCAGCACATTGG
Band lengths:
124-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development