MmuEX0027249 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86147250-86149394:-
Coord C1 exon
chr12:86149375-86149394
Coord A exon
chr12:86148121-86148160
Coord C2 exon
chr12:86147250-86147363
Length
40 bp
Sequences
Splice sites
3' ss Seq
TAACCTTCATTTCTGTGCAGATC
3' ss Score
8.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGACTCTCGGGCTGTTCAG
Seq A exon
ATCACAACCAGTGCTCCCCACCTACCTGCCCGGGTACCAG
Seq C2 exon
GGGATGCCACTGGAAGACCAGCACCATCCTTGCCTGGACAGGGCATTCCAGAGAGTCCAGCAGAAGAGCAAGTGATTCCCTCCAGTGATGTCTTGGTGACACACAGCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'14-14,'14-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=PU(5.3=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTCTCGGGCTGTTCAG
R:
GGGGCTGTGTGTCACCAAG
Band lengths:
130-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: