RnoEX0051382 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108527191-108529898:-
Coord C1 exon
chr6:108529683-108529898
Coord A exon
chr6:108528059-108528098
Coord C2 exon
chr6:108527191-108527304
Length
40 bp
Sequences
Splice sites
3' ss Seq
TAACCTTCATTTCTGCGCAGATT
3' ss Score
8.01
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACGCCTACTCAAGCTCAGACATCCGCCTGTCTATGAGGAAAGCTGAGGAAGAGGAACTGGCTAGCCCCGTAAGGGAACAGAGACAGCAGAGCAGTGGACCCCCACCTGGGGCAGCAGAAAGGCAGCCACTCCGGGCAGCCACTGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
Seq A exon
ATTACAACCAGTGCTCCCCACCTACCTGCCCGGGTACCAG
Seq C2 exon
GGGATGCCACTGGAAGACCAACGCCATCATTGCCTGGACAGGGCATTCCAGAGGGTCCAGCAGAAGAGCAGGTGATCCCTTCCAGTGATGTCCTGGTGACGCACGGTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=1.000 C2=0.821
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=6.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGAGACAGCAGAGCAG
R:
ATGATGGCGTTGGTCTTCCAG
Band lengths:
137-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]