BtaEX0020886 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50190430-50193415:+
Coord C1 exon
chr18:50190430-50190561
Coord A exon
chr18:50191725-50191856
Coord C2 exon
chr18:50193269-50193415
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCATGCTTTTGCAGACA
3' ss Score
10.39
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
ACATTGACGAATGTCGGGAGCGGGGCCCTGCCTTGTGCGGGTCCCAGCGTTGTGAAAATTCCCCGGGCTCCTACCGCTGTGTCCGAGACTGCGACCCCGGCTACCACGCAGGCCCCGAGGGCACCTGTGACG
Seq A exon
ACATAGATGAGTGCCAGGAATACGGCCCAGCGATTTGTGGAGCCCAGCGCTGTGAGAATACCCCTGGCTCCTACCGCTGCACGCCAGCCTGTGACCCTGGCTACCAGCCCACGCCAGGGGGCGGATGCCAGG
Seq C2 exon
ATGTGAATGAATGTGAGACACTACAGGGCGTGTGTGGAGCTGCCCTGTGTGAGAATGTGGAAGGCTCCTTCCTCTGTGTCTGCCCCAACAGCCCTGAGGAGTTTGACCCTATGACCGGGCGCTGTGTTTCCCCTCGGACCTCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=84.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATGTCGGGAGCGGGG
R:
CCGGTCATAGGGTCAAACTCC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development