MmuEX6009245 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27319411-27322153:-
Coord C1 exon
chr7:27322022-27322153
Coord A exon
chr7:27319625-27319756
Coord C2 exon
chr7:27319411-27319536
Length
132 bp
Sequences
Splice sites
3' ss Seq
CGGTCCCCACTCTGTTGTAGACA
3' ss Score
7.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACATTGACGAGTGTCGTGAACGGGGACCTGCCCTGTGCGGGTCTCAGCGCTGTGAAAATTCTCCTGGTTCCTACCGCTGTGTGCGGGACTGCGATCCAGGTTACCACCCCGGCCCTGAGGGCACCTGTGATG
Seq A exon
ACATTGATGAGTGCCGAGAATACGGCTCTGCGATTTGTGGTGCCCAGCGCTGTGAGAACACCCCGGGCTCCTACCGCTGCACACCAGCCTGCGACCCTGGCTATCAGCCTACACCAGGGGGCGGGTGCCAAG
Seq C2 exon
ATGTGGATGAATGCCGGAACCGGTCTTTCTGCGGCGCCCATGCTATGTGCCAGAATCTGCCTGGGTCCTTTCAGTGCGTCTGTGACCAAGGCTACGAAGGGGCACGGGACGGACGTCACTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'40-45,'40-44,41-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCGTGAACGGGGAC
R:
AGTGACGTCCGTCCCGTG
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types