RnoEX0051404 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84131996-84134485:-
Coord C1 exon
chr1:84134354-84134485
Coord A exon
chr1:84132211-84132342
Coord C2 exon
chr1:84131996-84132121
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCACTCTGTTGCAGACG
3' ss Score
8.53
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
ACATTGACGAGTGTCGTGAACGGGGACCTGCCCTGTGCGGGTCTCAGCGCTGTGAAAATTCTCCTGGCTCCTACCGCTGTGTGCGGGACTGCGATCCAGGTTACCACCCTGGCCCCGAGGGCACCTGTGATG
Seq A exon
ACGTGGACGAGTGCCGAGAATATGGCTCTGCGATTTGCGGCGCCCAGCGCTGTGAGAACACCCCTGGCTCCTACCGATGCACGCCAGCCTGCGACCCTGGCTATCAACCTACTCCAGGGGGCGGGTGCCAGG
Seq C2 exon
ATGTGGATGAGTGCCGGAACCGGTCTTTCTGCGGTGCCCATGCTATGTGCCAGAATCTGCCTGGCTCCTTCCAGTGCGTCTGTGACCAAGGCTACGAGGGGGCACGGGACGGGCGTCACTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'34-30,'34-29,35-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTCGTGAACGGGGA
R:
CCCCTCGTAGCCTTGGTCA
Band lengths:
226-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]