BtaEX0021128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106130517-106132089:-
Coord C1 exon
chr11:106131904-106132089
Coord A exon
chr11:106131077-106131225
Coord C2 exon
chr11:106130517-106130705
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTTCCACGTGGTAGAAT
3' ss Score
4.23
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCCCCCAGAACGAGCGCCAGAAGGCTGTGGTAGACGCCTTCCTCCACGCGTGGGCTGGATACCGCAAGTTCGCCTGGGGCCACGACGAGCTGAAGCCCCTGACCAGGTCCTTCAGCGAGTGGTTTGGCCTCGGCCTCACGCTGATCGACGCGCTGGACACCATGTGGATTCTGGGGCTAAAGAAAG
Seq A exon
AATTTCAAGAAGCCAGGAAGTGGGTGTCAAAGAAGTTACGGTTTCGGAAAAATGTGGACGTCAACCTGTTTGAGAGCACAATCCGGATCCTGGGGGGGCTTCTGAGTGCCTTCCACCTATCTGGGGACATCCTCTTCCTGAAGAAGGCT
Seq C2 exon
GAGGATTTTGGAAATCGGTTAATGCCTGCCTTCCGAACACCCTCTAAGATTCCATACTCCATGGTAAACATTGGCACTGGAGTTGCTCACCCACCCCGATGGACCTCTGATAGCACGGTGGCTGAGGTGACAAGCATTCAGCTGGAGTTCCGAGAGCTCTCTCGTCTCACGGGGGATAAGAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
A:
PF0153215=Glyco_hydro_47=FE(11.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCAGCGAGTGGTTTGG
R:
GAGAGAGCTCTCGGAACTCCA
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development