GgaEX1034698 @ galGal3
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:720265-724549:-
Coord C1 exon
chr17:724364-724549
Coord A exon
chr17:721081-721229
Coord C2 exon
chr17:720265-720453
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTATATTTTATACTTTGCAGAGT
3' ss Score
7.28
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TGCCCATAAACGAACGTCAGATGGCTGTGATAGAAGCCTTCCGCCACGCGTGGAAAGGATACAAAGATTTTGCCTGGGGCCATGATGAACTGAAGCCATTATCCAAGTCTTACAGTGAGTGGTTTGGCCTCGGGCTTACCTTGATTGATGCCTTGGATACTATGTGGATTTTAGGCCTGAGAGAAG
Seq A exon
AGTTTGAAGAAGCAAGAAAATGGGTAGCAAACGATTTAGCCTTTGATAAAAATGTGGATGTGAACCTGTTTGAGAGCACTATTCGTATTCTGGGTGGCTTACTGAGCACCTACCATCTCTCTGGAGATAGCCTCTTCCTGGAAAAAGCT
Seq C2 exon
AAAGACATTGGGAACAGGCTCATGCCAGCATTCAAGACTCCTTCCAAAATTCCGTACTCTGACGTCAACATTGGCCGGGGCACCGCACACCCACCCCGCTGGACGTCTGACAGCACTGTGGCAGAGGTGACCAGTATACAGCTGGAGTTCAGAGAGCTCTCTCGTCTCACTGGGGATGAAAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
A:
PF0153215=Glyco_hydro_47=FE(11.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGAACTGAAGCCA
R:
ATACTGGTCACCTCTGCCACA
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]