DreEX0044470 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28589088-28590581:-
Coord C1 exon
chr5:28590402-28590581
Coord A exon
chr5:28589368-28589516
Coord C2 exon
chr5:28589088-28589276
Length
149 bp
Sequences
Splice sites
3' ss Seq
AGATATATTTTGTCGTCAAGAGT
3' ss Score
-1.14
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCGAGAGTAGACTGGAGGCTGTGAGAGAAGCTTTTAGACATGCCTGGAAAGGTTACAAGGACTTCGCTTGGGGTCACGATGAACTCAAACCAATCTCTAAATCATACGGAGAGTGGTTTGGACTTGGGCTGACCCTAATTGATGCTCTAGATACCATGTGGATCTTGGGTCTACAAGAAG
Seq A exon
AGTTTGCAGAGGCCAGGGAGTGGGTGGCCAAAGAGCTCTCTTTCGATAAGAATGTGGATGTTAATCTGTTCGAGAGCACCATTCGTATCCTGGGTGGCCTACTGAGTACCTACCATCTCACAGGAGACAACCTTTTCCTGGATAAAGCT
Seq C2 exon
AAAGAGATTGGCTTCAGACTGATGCCCGCCTTCAGCACTCCCTCCAAAATCCCCTATTCTGATGTGAATATTGGGAAGGGCACAGCTCATCCTCCGCGATGGACTTCAGACAGCACCGTAGCCGAGGTCACTAGCATTCAGCTGGAGTTCAGAGAGCTCAGCCGACTCACTGGAGACCCCAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'7-12,'7-10,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=PU(11.4=82.0)
A:
PF0153215=Glyco_hydro_47=FE(11.2=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGGACTTCGCTTGGGGT
R:
GCTACGGTGCTGTCTGAAGTC
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]