BtaEX0021421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36682216-36684883:-
Coord C1 exon
chr2:36684843-36684883
Coord A exon
chr2:36683876-36683900
Coord C2 exon
chr2:36682216-36683522
Length
25 bp
Sequences
Splice sites
3' ss Seq
CGGATACATCAAACATGCAGCGG
3' ss Score
1.07
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCAGGTCCATCGTGTTGGCTAATACAAAGATCTCTTTTTT
Seq A exon
CGGTAATAAGCCAGATTCTCCTCAG
Seq C2 exon
CTTCAGAAGATGATTCTGAAGAGGATGGAGACCATAACAGAACATTTGATATTGCCTAACTGCATATAAGACAAATGGATAATCTGTGAACAAGCGTTATTAAAACTGGCAATTACGTATGAGTGAATTTTGTGGGGAAATGTCTGTTGAATATATTATCTCTATAGAATGAATATATATATATAGTTCATATATACACTTTATGCATGTATATATATGTTCATTCTCAAGTGTTACTAAATTAAAATTCTGCTGGACCTTTAATATGGCCAGTGAATCTAATGTTTATAAACTGGTAATTAAAAGTATTTTTCTTTTAATGAGTGGGGAAAGTGTTACCCTTGTTTTAAATAAGCAATGTTGACAGCCCTTTTTTGTGTTCTGATTACTGTAGTTATATTTATGAAGAAAGGTTGGTGTTTTGGTCTGTTAGTGGTAAAAGTGGGACAAAATAGGCTTGCAAAATAAATTGCCAGATGGCACCTAATTATTTTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755-'20-17,'20-16,21-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000011533fB4095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCCATCGTGTTGGCTAA
R:
TCCATTTGTCTTATATGCAGTTAGGC
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development