MmuEX0027932 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60245212-60249211:+
Coord C1 exon
chr2:60245212-60245260
Coord A exon
chr2:60247488-60247512
Coord C2 exon
chr2:60247890-60249211
Length
25 bp
Sequences
Splice sites
3' ss Seq
CGGATGCATCAAACATGCAGCGG
3' ss Score
1.43
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq A exon
CGGTAATAAGCCAGATTCTACTCAG
Seq C2 exon
CTTCAGAGGATGAATTCTGAAGAAGATGGAGACCATAAGAGAATGCTTGATATTGCCTAACTTCATTTAAGAAAAAAAAAAAAAGGATGATCTGTGAACATGTTTATTAAAACTGGCAATTAAGTATGGATAATTTCATGGGGTAATGCCTAGTAGATTAATTGACTATACATAAAATGAATATATATATATACATGTATAAATGTAAATATATATTCATTCTCAAGTATTGCTGAACTGAAATTCTTGAGCTGGACCCTTTAACACTGGCCAGCGAATCTCATGTTTATAATATGTAATCCAAGCATTTTTCCTTTTGGTGAGTGGGAAAGCATTACCCTTGTTTGAAATATCTAAACAGTGCTCATCAACTTTCTTCTTTGTTGCAATTACTGTAGTCATATTTATGGGAAAAAAATGTTTGTGTATTAGTCTCTTGCTAGTGAAAAAAAGTCAGATAAAATGTCCTTTTGAAATAAAATGCCAATGGCACCTAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACATATGGAAGATCTCGA
R:
ACATGTTCACAGATCATCCTTTTT
Band lengths:
128-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types