RnoEX0052749 @ rn6
Exon Skipping
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46321233-46323976:+
Coord C1 exon
chr3:46321233-46321281
Coord A exon
chr3:46323444-46323468
Coord C2 exon
chr3:46323841-46323976
Length
25 bp
Sequences
Splice sites
3' ss Seq
CGGATGCATCAAACATGCAGCGG
3' ss Score
1.43
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq A exon
CGGTAATAAGCCAGATTCTACTCAG
Seq C2 exon
CTTCAGAGGATGAGTTCTGAAGATGATGGAGACCACAACAGAAGGCTTGATATTGCTTCACTTCATTTAAGACAAATGGATTATCTGTGAACATGTTTGTTGAAACTGGCAATTAAGTATGAATAATTTCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000008464fB8412
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCTTGCAAGAACTCTTCAGGC
R:
AAATGAAGTGAAGCAATATCAAGCCT
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]