RnoEX0052748 @ rn6
Exon Skipping
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46319640-46323976:+
Coord C1 exon
chr3:46319640-46319753
Coord A exon
chr3:46321233-46321281
Coord C2 exon
chr3:46323841-46323976
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAACAAAGCTTTTCTGATATGATGGGAAATACAATCGAACCAAGCACGCGCGTCCGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq C2 exon
CTTCAGAGGATGAGTTCTGAAGATGATGGAGACCACAACAGAAGGCTTGATATTGCTTCACTTCATTTAAGACAAATGGATTATCTGTGAACATGTTTGTTGAAACTGGCAATTAAGTATGAATAATTTCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTGGTCTCTACCTAGT
R:
AGCCTTCTGTTGTGGTCTCCA
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]