HsaEX0037886 @ hg19
Exon Skipping
Gene
ENSG00000136536 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17393]
Coordinates
chr2:160619391-160623880:+
Coord C1 exon
chr2:160619391-160619504
Coord A exon
chr2:160621137-160621185
Coord C2 exon
chr2:160623795-160623880
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq C2 exon
CTTCAGAGGATGATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-'18-17,'18-15,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.046 A=0.294 C2=0.803
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGTCTCTACCTAGTGGT
R:
TGTCCTGTTATGGTCTCCGTCT
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)