BtaEX0021423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36682216-36687646:-
Coord C1 exon
chr2:36687533-36687646
Coord A exon
chr2:36686077-36686125
Coord C2 exon
chr2:36682216-36683522
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACGAATGAACCAAGCACACGTGTCCGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq C2 exon
CTTCAGAAGATGATTCTGAAGAGGATGGAGACCATAACAGAACATTTGATATTGCCTAACTGCATATAAGACAAATGGATAATCTGTGAACAAGCGTTATTAAAACTGGCAATTACGTATGAGTGAATTTTGTGGGGAAATGTCTGTTGAATATATTATCTCTATAGAATGAATATATATATATAGTTCATATATACACTTTATGCATGTATATATATGTTCATTCTCAAGTGTTACTAAATTAAAATTCTGCTGGACCTTTAATATGGCCAGTGAATCTAATGTTTATAAACTGGTAATTAAAAGTATTTTTCTTTTAATGAGTGGGGAAAGTGTTACCCTTGTTTTAAATAAGCAATGTTGACAGCCCTTTTTTGTGTTCTGATTACTGTAGTTATATTTATGAAGAAAGGTTGGTGTTTTGGTCTGTTAGTGGTAAAAGTGGGACAAAATAGGCTTGCAAAATAAATTGCCAGATGGCACCTAATTATTTTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755_MULTIEX1-2/4=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGAACCAAGCACACGT
R:
TGCCAGTTTTAATAACGCTTGTTCA
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development