BtaEX0021424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36682216-36686125:-
Coord C1 exon
chr2:36686077-36686125
Coord A exon
chr2:36685357-36685542
Coord C2 exon
chr2:36682216-36683522
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTCCTTGTTCAGGTC
3' ss Score
10.44
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq A exon
GTCCTCATGGACCTTTAATAGGCAGCCAGCTACGCCAGCAGCTCCAATCTCTTAAGATCACGTTCCAGCTTTAGGACTTCTGCCTGGGCTCCTTTGTGAAGGCACTTAATGCCCAAATCTTTACAGGCATCTGCACAGCTTGCCCTCTTCTCAAAGTCCTACAGTCTCCAGGGTGCTTCATACCAG
Seq C2 exon
CTTCAGAAGATGATTCTGAAGAGGATGGAGACCATAACAGAACATTTGATATTGCCTAACTGCATATAAGACAAATGGATAATCTGTGAACAAGCGTTATTAAAACTGGCAATTACGTATGAGTGAATTTTGTGGGGAAATGTCTGTTGAATATATTATCTCTATAGAATGAATATATATATATAGTTCATATATACACTTTATGCATGTATATATATGTTCATTCTCAAGTGTTACTAAATTAAAATTCTGCTGGACCTTTAATATGGCCAGTGAATCTAATGTTTATAAACTGGTAATTAAAAGTATTTTTCTTTTAATGAGTGGGGAAAGTGTTACCCTTGTTTTAAATAAGCAATGTTGACAGCCCTTTTTTGTGTTCTGATTACTGTAGTTATATTTATGAAGAAAGGTTGGTGTTTTGGTCTGTTAGTGGTAAAAGTGGGACAAAATAGGCTTGCAAAATAAATTGCCAGATGGCACCTAATTATTTTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000011533fB4096
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACATATGGAAGATCTCGA
R:
AAGGTCCAGCAGAATTTTAATTTAGT
Band lengths:
286-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development