HsaEX0037886 @ hg38
Exon Skipping
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159762880-159771027:+
Coord C1 exon
chr2:159762880-159762993
Coord A exon
chr2:159764626-159764674
Coord C2 exon
chr2:159767284-159771027
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq C2 exon
CTTCAGAGGATGATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGATCTGTGAACATAAGTGTTTATTAAAAATGGCAATTAAATATAAATTACTTTTGTGGGGGAATGCCTAATAAATACATTGACTATATATAAAATGAATATATACATACACATGTATGCCTGTATATATATATTCATTCTCCAGTGTTGCTGAATTAAAATTCTGCTGGACTTTTTAACATAGCAAATCCGATGTTTATAAACTGGTAATCAAAAAGGTTTTTTCTTTTAGGTGAGTGGGAAAGTATTACCCTTGTTTTAAATATCTAAGCAATGCCTATCAACCCTTTTTTGTGTTATGATTACTGTAGTCATATTTATGAAAAAAGGTTTGTGTTTTACTCTTGCTAGTGAGAAAAGTGGGACAAAATATACTTTTGAAATAAAATGCTATATGGCACCTAATTATTTTTTCTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536_MULTIEX1-12/12=11-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.061 A=0.294 C2=0.734
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGTCTCTACCTAGTGGT
R:
TGTCCTGTTATGGTCTCCGTCT
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development