MmuEX0027931 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60243557-60249211:+
Coord C1 exon
chr2:60243557-60243670
Coord A exon
chr2:60245212-60245260
Coord C2 exon
chr2:60247890-60249211
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAACAAAGCTTTTCTGATATGATGGGAAATACAATTGAACCAAGCACTCGTGTCCGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
Seq C2 exon
CTTCAGAGGATGAATTCTGAAGAAGATGGAGACCATAAGAGAATGCTTGATATTGCCTAACTTCATTTAAGAAAAAAAAAAAAAGGATGATCTGTGAACATGTTTATTAAAACTGGCAATTAAGTATGGATAATTTCATGGGGTAATGCCTAGTAGATTAATTGACTATACATAAAATGAATATATATATATACATGTATAAATGTAAATATATATTCATTCTCAAGTATTGCTGAACTGAAATTCTTGAGCTGGACCCTTTAACACTGGCCAGCGAATCTCATGTTTATAATATGTAATCCAAGCATTTTTCCTTTTGGTGAGTGGGAAAGCATTACCCTTGTTTGAAATATCTAAACAGTGCTCATCAACTTTCTTCTTTGTTGCAATTACTGTAGTCATATTTATGGGAAAAAAATGTTTGTGTATTAGTCTCTTGCTAGTGAAAAAAAGTCAGATAAAATGTCCTTTTGAAATAAAATGCCAATGGCACCTAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTGGTCTCTACCTAGT
R:
TCAAGCATTCTCTTATGGTCTCCA
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types