GgaEX0019033 @ galGal3
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38342312-38348598:+
Coord C1 exon
chr7:38342312-38342425
Coord A exon
chr7:38344299-38344347
Coord C2 exon
chr7:38346196-38348598
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCCTTATTTCTAGTTT
3' ss Score
8.11
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCAGACTATGAATTTATCAGCTCTGGTCTCTACCTTGTGGTGTTGTTACACTTATGTGAGCAGCGCTTTTCTGATATGCTTGGAACCGCAAGTGAGGCCAGCACACGTGTCAGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
Seq C2 exon
CTTCTGAGGATGATTCTGAAGACTGATGCTGGTATAACTTTTATGCTGAAAGAAACAGAAGTGCTGCAGAAATGCTGAACTGACAAGAACAAAATCAACATACATTTGTTTTTTGCTCTCCTTCATAAAAAGAGCATTGAATATTACTGTAGTTTTTGAAGCATTGTTTAATTCAAAATCAGCTGCTGCACTGTGGAAGTCAGTGGACTTAAGAACTATTCAACATGTGTGAAGATTTTCTATATGTATGTGCATACATATATACACACACAGTATATATATGCACACATATATGTAAAGCAACTTCACTTTTTAAATGAAGGTATGCTTCATTTTGGGAGACATCAGATTTTGAGTGTATAAGAAAGCTATATCTCTTGCTTTTCTTCTTACTGTAGTCACATTTCTGGTTTTGTCTATCAAGTTTTGCTCCTCTACTGGCACTAAGTGGTTATTGTGGGTTTTGGGGTGAGGGTGGGGAGGGAGGGTGGGGATATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.294 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTATGTGAGCAGCGCTT
R:
GCAGCACTTCTGTTTCTTTCAGC
Band lengths:
134-183
Functional annotations
There are 0 annotated functions for this event