GgaEX0019033 @ galGal4
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36202933-36206842:+
Coord C1 exon
chr7:36202933-36203046
Coord A exon
chr7:36204920-36204968
Coord C2 exon
chr7:36206817-36206842
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCCTTATTTCTAGTTT
3' ss Score
8.11
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCAGACTATGAATTTATCAGCTCTGGTCTCTACCTTGTGGTGTTGTTACACTTATGTGAGCAGCGCTTTTCTGATATGCTTGGAACCGCAAGTGAGGCCAGCACACGTGTCAGA
Seq A exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
Seq C2 exon
CTTCTGAGGATGATTCTGAAGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584-'19-28,'19-27,20-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.294 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTATCAGCTCTGGTCTCTACC
R:
TCAGTCTTCAGAATCATCCTCAGA
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]