GgaINT0050128 @ galGal4
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36204920-36206842:+
Coord C1 exon
chr7:36204920-36204968
Coord A exon
chr7:36204969-36206816
Coord C2 exon
chr7:36206817-36206842
Length
1848 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
ATATTCTGTTGTTCCAACAGCTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
Seq A exon
GTAGGTGCTTCCCCTCTTCTCCCCCCTCTCTCTCCCACTGGACCTAGTCAAGGTTAAATGAATACAATCCTCCATTGCCAAGAATCGTACTACCAAAATTAGTTATTGAAAATTTGAATTAGTTGTTGTTTTTTGTTGTTGTTTGTTTGTTTGTTTGTTTTTCCAGTATCAGTAGAATTATTCTAAGTAGAAGCTGATATTAAGTCTCCATGATTGATTTCCTGGCACCGTGCAGTTTAGACCATGGAATTGTTTTCTGCCAGTGATGCCAAGATTCCTCACTAGTAACAGTTTATTCTAGTAGTATGATGTTATGGAACTGTTTGTGACCTTCAGGCTGTAGCCTTTTTCATGAGTCCTAGTAGAAAAGACACAGCTTAAGTTTTACTGTGCTCAGATTATCATACTTTGCTTGCCATTTTTATTCCCCCTATTTTCCCCACACTTTTTTGGTCTACATATTTCTTTACCAGCACTTCCCACTTCTGGGTGAAATTTTAGAGTTCTCAGCTTTGGCAGAGGGCTAGCTTACTTTTTGCCTAGTGTTTCTTTAATGTGATGAAATGAAAAAATGTGTGCTGACTTAGGCATATGTAGCCTGAATCTGAGTATTGTTTAGGGCATTATGAACAGACAGTGGAAAGGTAGATGTTTTTCTGGTTTGTGTTTGTCTGTGAACATGCAGATTTTGTATATAAATTGATCTTACAGCACATAGGACAGGCTTGGAGTTTGATAAAGAATGCTGTAAGGAGGGGAGGAGAAATTATTCAAAAAACATGATTATTCTGCATTCAGAGCATATATTAGAATTATTTTCTGTAACAAAGGTGGACTGGAATTCAAAATTTGTTAAGCTACTTCATTCTTATTATAGTCCTATAGAAGTTAATCTTAGTAAATGGTATTCACACAGTAATTGAATCTACATTTGAGTGAGGCTTCATCTAATTTGCAGCTGAGGAGTACTGAGTTTCAATTTATTACTGACAGTGTTTAAGTTAGGTTTCTCTTAAGTGGCTGGGGGGGACAGGGACTGGTGAAGTGAGGAGACATTTTGCTTCCCTCTTTATGTTAAGAGGGATAACAAATGACTTGAGGGCAAATAATTTCAAGAAAACAGAGTTAGTTTAGAAGGACAACTTAGATTAATTGCTGTTGTGCACAAGCTAACACTTGACAGACTGACTGTAGATATGCTTACTGAAGTTTTCTCACTATTGACAGCATATATTTGTCCTTTGGTTCACCATACAACAGCAGAATCCTACGCATATGGAGACATTGTGTTGAATTTGCTTATGCTTTTAAGAATGGGAGGGGAGAGAGGAGCTGCTTCCAAGTAGGACTGGCTTAATTGCATTAAGCAATGTGTATATTTATATAAGAGTCAGAAAACAGTTTGTAGAAACTACTTAACCTTTCTAGGTATTTTGGTATACAAATCATTAACTCCCACGGATTCATTTCTTCCCTTCGTATTGGGTGCAGCTGCCATGGATTGAATATACTCTTTTAACTGTAGTTGGAATTAGCAACTGTGAGCATTACATAAAAGTTGACTCTCTAGCATAATCAAGTTTTCTTCCTGTTATTTTGAGGAGAAACAGCAGGAAGGCACTGCAATTTGTAATGTGGAACTTGGATTTTAAAATTCTGCAGTTTTCAGATGTGAGATGCATTTAAAAATTAAGCTAGGTAATTATACAATATTTGGACAGGTGCTACAGTCAGCTATTGATGTTAAAAAATCACCTTCATTTCCACTACTCATATTTTAAACTAAAAGTTCTCTAAATTCCTCAAACCTTTATGAAGGCTTCTGATTATATTCTGTTGTTCCAACAG
Seq C2 exon
CTTCTGAGGATGATTCTGAAGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]