GgaINT0050128 @ galGal3
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38344299-38346687:+
Coord C1 exon
chr7:38344299-38344347
Coord A exon
chr7:38344348-38346195
Coord C2 exon
chr7:38346196-38346687
Length
1848 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
ATATTCTGTTGTTCCAACAGCTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
Seq A exon
GTAGGTGCTTCCCCTCTTCTCCCCCCTCTCTCTCCCACTGGACCTAGTCAAGGTTAAATGAATACAATCCTCCATTGCCAAGAATCGTACTACCAAAATTAGTTATTGAAAATTTGAATTAGTTGTTGTTTTTTGTTGTTGTTTGTTTGTTTGTTTGTTTTTCCAGTATCAGTAGAATTATTCTAAGTAGAAGCTGATATTAAGTCTCCATGATTGATTTCCTGGCACCGTGCAGTTTAGACCATGGAATTGTTTTCTGCCAGTGATGCCAAGATTCCTCACTAGTAACAGTTTATTCTAGTAGTATGATGTTATGGAACTGTTTGTGACCTTCAGGCTGTAGCCTTTTTCATGAGTCCTAGTAGAAAAGACACAGCTTAAGTTTTACTGTGCTCAGATTATCATACTTTGCTTGCCATTTTTATTCCCCCTATTTTCCCCACACTTTTTTGGTCTACATATTTCTTTACCAGCACTTCCCACTTCTGGGTGAAATTTTAGAGTTCTCAGCTTTGGCAGAGGGCTAGCTTACTTTTTGCCTAGTGTTTCTTTAATGTGATGAAATGAAAAAATGTGTGCTGACTTAGGCATATGTAGCCTGAATCTGAGTATTGTTTAGGGCATTATGAACAGACAGTGGAAAGGTAGATGTTTTTCTGGTTTGTGTTTGTCTGTGAACATGCAGATTTTGTATATAAATTGATCTTACAGCACATAGGACAGGCTTGGAGTTTGATAAAGAATGCTGTAAGGAGGGGAGGAGAAATTATTCAAAAAACATGATTATTCTGCATTCAGAGCATATATTAGAATTATTTTCTGTAACAAAGGTGGACTGGAATTCAAAATTTGTTAAGCTACTTCATTCTTATTATAGTCCTATAGAAGTTAATCTTAGTAAATGGTATTCACACAGTAATTGAATCTACATTTGAGTGAGGCTTCATCTAATTTGCAGCTGAGGAGTACTGAGTTTCAATTTATTACTGACAGTGTTTAAGTTAGGTTTCTCTTAAGTGGCTGGGGGGGACAGGGACTGGTGAAGTGAGGAGACATTTTGCTTCCCTCTTTATGTTAAGAGGGATAACAAATGACTTGAGGGCAAATAATTTCAAGAAAACAGAGTTAGTTTAGAAGGACAACTTAGATTAATTGCTGTTGTGCACAAGCTAACACTTGACAGACTGACTGTAGATATGCTTACTGAAGTTTTCTCACTATTGACAGCATATATTTGTCCTTTGGTTCACCATACAACAGCAGAATCCTACGCATATGGAGACATTGTGTTGAATTTGCTTATGCTTTTAAGAATGGGAGGGGAGAGAGGAGCTGCTTCCAAGTAGGACTGGCTTAATTGCATTAAGCAATGTGTATATTTATATAAGAGTCAGAAAACAGTTTGTAGAAACTACTTAACCTTTCTAGGTATTTTGGTATACAAATCATTAACTCCCACGGATTCATTTCTTCCCTTCGTATTGGGTGCAGCTGCCATGGATTGAATATACTCTTTTAACTGTAGTTGGAATTAGCAACTGTGAGCATTACATAAAAGTTGACTCTCTAGCATAATCAAGTTTTCTTCCTGTTATTTTGAGGAGAAACAGCAGGAAGGCACTGCAATTTGTAATGTGGAACTTGGATTTTAAAATTCTGCAGTTTTCAGATGTGAGATGCATTTAAAAATTAAGCTAGGTAATTATACAATATTTGGACAGGTGCTACAGTCAGCTATTGATGTTAAAAAATCACCTTCATTTCCACTACTCATATTTTAAACTAAAAGTTCTCTAAATTCCTCAAACCTTTATGAAGGCTTCTGATTATATTCTGTTGTTCCAACAG
Seq C2 exon
CTTCTGAGGATGATTCTGAAGACTGATGCTGGTATAACTTTTATGCTGAAAGAAACAGAAGTGCTGCAGAAATGCTGAACTGACAAGAACAAAATCAACATACATTTGTTTTTTGCTCTCCTTCATAAAAAGAGCATTGAATATTACTGTAGTTTTTGAAGCATTGTTTAATTCAAAATCAGCTGCTGCACTGTGGAAGTCAGTGGACTTAAGAACTATTCAACATGTGTGAAGATTTTCTATATGTATGTGCATACATATATACACACACAGTATATATATGCACACATATATGTAAAGCAACTTCACTTTTTAAATGAAGGTATGCTTCATTTTGGGAGACATCAGATTTTGAGTGTATAAGAAAGCTATATCTCTTGCTTTTCTTCTTACTGTAGTCACATTTCTGGTTTTGTCTATCAAGTTTTGCTCCTCTACTGGCACTAAGTGGTTATTGTGGGTTTTGGGGTGAGGGTGGGGAGGGAGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAACTCTTCAGGCACA
R:
AAGTTGCTTTACATATATGTGTGCA
Band lengths:
344-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]