GgaINT0050127 @ galGal4
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36202933-36204968:+
Coord C1 exon
chr7:36202933-36203046
Coord A exon
chr7:36203047-36204919
Coord C2 exon
chr7:36204920-36204968
Length
1873 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTCTCTGCCTTATTTCTAGTTT
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCAGACTATGAATTTATCAGCTCTGGTCTCTACCTTGTGGTGTTGTTACACTTATGTGAGCAGCGCTTTTCTGATATGCTTGGAACCGCAAGTGAGGCCAGCACACGTGTCAGA
Seq A exon
GTAAGTATGCTTTCATCTTCTGTAAGGGATTGCTCATAGTGAGAACTTGGAACTAGACTGCTGCCTTGAATGACCTAGGAGCTAGAAGCTCAAGAAGTGCTGTTATTTGAGAAATATGGATCTAAAGTTGTCTGGATTTGTCTGATGTAGTAACACGTAATCAATCTGAAAGTAACGGTACTACTTCGGTTTAGTTACTGTGTTGCAAAATGATTTTTGCCCAGGTTGTTGATAATTGATAGCTTTGTATGCAGGTTACCGTAAATACTAATCATAATTAGTATGATAATTATAATAATTATAAATTATATATTAAATATATTATAAATATATAAAATATATTATATTATGTATTATATATACACATATAATACATAATATATACTATATATTAATACAGTAAATATATATGTGTATTAAGCATATATTAATATATAATTATAAATATACTATATTAAAATATAAATAATCATAATTGAACGTAAATCTAGCCCAAACTAGAATGTTCATCTTCGTTTGAAAAATGTACATTTTAGATTATTGGACTATCTTACTTGACAAATCTTTCTCATCATGCCAGTCTACACTGCAGAGGTTTGGACCTTGCAGAGCTGTCAGCCAGTTTGAGCCCAAAGCGTGTACTTAAGTGTTAGCATTCTGAAGCTGCCTAGTTGTAGTATGACTTCCTGGCATTAGTCAAAGTTCTCAGTAGCTGGGTTTGACTAGATCGTTGTCACTGGAATAGCTTGACACGGAGGTGTAGTAAATAGACCTTTTTACCTGTAACAGACCATAATTCAAAATCATTCTGCATAGTTACTCATCAAAAAATGCTGTATTCTGCATGTTAATTTGGTGCTGGATAATGAACCTATACTCTTCGTCAACTTAAGCTGAAAATATGATTTTAAAAACTTAATTGCTTACAAAGAATTAACGATAGAAAGCCTGTCCAAAACTTGTTTGAATGTTTGCATAGCACATAGTAGGCTTTTGAAGTTGAGTCAGGACTTTACAGTAATCTTATATTATATTAGAACAGTAGTCCTCTTTCTATGGATACCTAAGAGAATAGCTTATTTTCCATGGTCTGCAAATGAAATGTCCATTTTCTTCCTCTACAACTATAGAGACAAGATACATAATATAACTGTAGCCAGTGTATAGTACAGTTTATTAGCTTGAGTGTATTGCAGAAATATGAAATTTTTAATGTGTTTAATCAGTGATGGCATTACGTTGTTGTGAGATGCTGTGTTTTAAACCAGTAAGAGTACCCATGCATGTTTGATACTGACAGCACAACCAGGCTATGGTTATTTTTGTTTCCTTATATTTGCTGTGTGTCAACATGTGGTGTATCAGTTAAACAGCGATGTAGGTTGTCACTGTGATGCTGTGTTCTTCTGAAATTTAACTGCCACTGTTGCCTGATAGTTACTGCAGTTCTAAAACTTTTATTTATGATTATAATCTTTAATGCCTTTTTTTTTTCTTCATTACCCTTGTTTACCATGGGGCTCTATTTTGCCATGTCAATGACACTGGCAATTGCTTACTTGTTTGCAACTCTCAAAGTAAACGTGTACATTCTGTAGAATAAAAGAATGATGAATACTAGAAGTATTTGACAGAGTGGAAGCTGAAATAACTATGGAGTAGCAATTTGAAGTCTAATGTGTGGGACTTGAGATTAAATTTTGCATTCCTTTTGTAAGTTGGGCAAATGGCTTAGGGTAAGTGACTTCTGAAATGAAGCTTTCCAATATAAAAAGTGAAGAAAAGGTGAAGATTACTTCTTTGCTAACTTGTTGCAAATTTCTGCGCATAACTTTGCAACTTTTAAACTACTTTCTCTCTGCCTTATTTCTAG
Seq C2 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]