GgaINT0050127 @ galGal3
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38342312-38344347:+
Coord C1 exon
chr7:38342312-38342425
Coord A exon
chr7:38342426-38344298
Coord C2 exon
chr7:38344299-38344347
Length
1873 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTCTCTGCCTTATTTCTAGTTT
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCAGACTATGAATTTATCAGCTCTGGTCTCTACCTTGTGGTGTTGTTACACTTATGTGAGCAGCGCTTTTCTGATATGCTTGGAACCGCAAGTGAGGCCAGCACACGTGTCAGA
Seq A exon
GTAAGTATGCTTTCATCTTCTGTAAGGGATTGCTCATAGTGAGAACTTGGAACTAGACTGCTGCCTTGAATGACCTAGGAGCTAGAAGCTCAAGAAGTGCTGTTATTTGAGAAATATGGATCTAAAGTTGTCTGGATTTGTCTGATGTAGTAACACGTAATCAATCTGAAAGTAACGGTACTACTTCGGTTTAGTTACTGTGTTGCAAAATGATTTTTGCCCAGGTTGTTGATAATTGATAGCTTTGTATGCAGGTTACCGTAAATACTAATCATAATTAGTATGATAATTATAATAATTATAAATTATATATTAAATATATTATAAATATATAAAATATATTATATTATGTATTATATATACACATATAATACATAATATATACTATATATTAATACAGTAAATATATATGTGTATTAAGCATATATTAATATATAATTATAAATATACTATATTAAAATATAAATAATCATAATTGAACGTAAATCTAGCCCAAACTAGAATGTTCATCTTCGTTTGAAAAATGTACATTTTAGATTATTGGACTATCTTACTTGACAAATCTTTCTCATCATGCCAGTCTACACTGCAGAGGTTTGGACCTTGCAGAGCTGTCAGCCAGTTTGAGCCCAAAGCGTGTACTTAAGTGTTAGCATTCTGAAGCTGCCTAGTTGTAGTATGACTTCCTGGCATTAGTCAAAGTTCTCAGTAGCTGGGTTTGACTAGATCGTTGTCACTGGAATAGCTTGACACGGAGGTGTAGTAAATAGACCTTTTTACCTGTAACAGACCATAATTCAAAATCATTCTGCATAGTTACTCATCAAAAAATGCTGTATTCTGCATGTTAATTTGGTGCTGGATAATGAACCTATACTCTTCGTCAACTTAAGCTGAAAATATGATTTTAAAAACTTAATTGCTTACAAAGAATTAACGATAGAAAGCCTGTCCAAAACTTGTTTGAATGTTTGCATAGCACATAGTAGGCTTTTGAAGTTGAGTCAGGACTTTACAGTAATCTTATATTATATTAGAACAGTAGTCCTCTTTCTATGGATACCTAAGAGAATAGCTTATTTTCCATGGTCTGCAAATGAAATGTCCATTTTCTTCCTCTACAACTATAGAGACAAGATACATAATATAACTGTAGCCAGTGTATAGTACAGTTTATTAGCTTGAGTGTATTGCAGAAATATGAAATTTTTAATGTGTTTAATCAGTGATGGCATTACGTTGTTGTGAGATGCTGTGTTTTAAACCAGTAAGAGTACCCATGCATGTTTGATACTGACAGCACAACCAGGCTATGGTTATTTTTGTTTCCTTATATTTGCTGTGTGTCAACATGTGGTGTATCAGTTAAACAGCGATGTAGGTTGTCACTGTGATGCTGTGTTCTTCTGAAATTTAACTGCCACTGTTGCCTGATAGTTACTGCAGTTCTAAAACTTTTATTTATGATTATAATCTTTAATGCCTTTTTTTTTTCTTCATTACCCTTGTTTACCATGGGGCTCTATTTTGCCATGTCAATGACACTGGCAATTGCTTACTTGTTTGCAACTCTCAAAGTAAACGTGTACATTCTGTAGAATAAAAGAATGATGAATACTAGAAGTATTTGACAGAGTGGAAGCTGAAATAACTATGGAGTAGCAATTTGAAGTCTAATGTGTGGGACTTGAGATTAAATTTTGCATTCCTTTTGTAAGTTGGGCAAATGGCTTAGGGTAAGTGACTTCTGAAATGAAGCTTTCCAATATAAAAAGTGAAGAAAAGGTGAAGATTACTTCTTTGCTAACTTGTTGCAAATTTCTGCGCATAACTTTGCAACTTTTAAACTACTTTCTCTCTGCCTTATTTCTAG
Seq C2 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATATTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]