RnoINT0089732 @ rn6
Intron Retention
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46319640-46321281:+
Coord C1 exon
chr3:46319640-46319753
Coord A exon
chr3:46319754-46321232
Coord C2 exon
chr3:46321233-46321281
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAACAAAGCTTTTCTGATATGATGGGAAATACAATCGAACCAAGCACGCGCGTCCGA
Seq A exon
GTAAGTAGTCTTGGCATTGGGGCAAGATGGGAGGGGATACAGTTATTCTATGTGTTCCCATCATACTCCTTCCCCCAGTCCTTTAGGAGAGGCCTTACTTTGAAATATTTCTTAACAGTGTAGTCTTTATTTAAGGCAAACTGCTGTCTTCTATGATAAATACCCTAATTTTGTCATAGGCTATTCAGAGAAAGAAGCTCTTGAAAGTGAAATATTTTAAGGAGAAGAAATAGGGTCAGAATTAGAAATACCAAGAAACAAAAATTTGTTATTTTTAATTTATTGAAAAAAGGCCAAAAGAATGTGGGTGATTAAATGTTTGTTGTTCTAAATTAATAATATTACCAACTAAGGAAGGAACTAGTTGCTGTAAATGGTGTTTAATATTATTAATTGTACCTTTAGGCTAACTTTTTGTTATGTATTTGTAATCAATGCTCAGTGAATCAAACCTGTTGTTCAGACCATTTTATATATCTCTCTCTTATCGCAACATTCTGAATACTTCCTGAATTGAAATGTGTTCATAGTATGGTAAAATGTGTGCAATTAACCATTTTATTATTCTTAAGTATATAAAGCTAAAAGAGTTCATGTTAAGGTGAAATGTTTTCATCTTAATATGATAAAAGGTATAATGCAAAATACATGTTGCTATTCTAAATAATGTTAATAGAAACTAGAAGTATTTGTTACACCTGCACTAATTTTAGGATTTAACAGGATTTGAAATAAATTCAGACAGCACATTTTCAGTTTTTTATTACCATACGTGAAAGTAAATACAAAATTCAAAATACAAGTTAACTTCTCTCGTGTTCTTCATTATTACAGGGATATTTAAGTGACCCAACTGATAATTACTGACATTAAGATTAAAAAACAAACTTATGTGCTGTGAATATAAGTGTTTTTCTGCTAATTTTTCAGTAGTTCAGAAGTCAGGCTGCTATCTGGAATTAATACCATGAAATGATGTCTAAAAAAGTGTGTTAACTCCTGCAAAGGAAGAAACCATATAAAGCATATAAGTTTCCTTTAACTAATTCTTAAACTATAGTAAAAATCACTCTTAGTTTTCTATTGTACAAGCGTTGAGTTAGATGGCTCTACAGCTGTCAAGTTTAGGCAGGCAGACATCAGTTCATTTGGGCCCAGAAAACAAAGTTTTGTTTCTCCTCCATTCCCCTTGATTTCATAATTTTTTTTTGAAAGTGTTAGGAAGACAGTATTACTGGATACAACAATTATTTGATTATGTTTGCTTCCAATTTCATGGTACTGGTTTCCCCATGGTTAATAACGATTACATAAAACGTAATATAATACACCCTCAATGTTTTAATTTTTATTGTTGGGGAAGACCTTTGTTTAAAGGATTAAAATGGTGTTTGACTTCATAAGTAGAAATAAATCTCCTATTCTTTAGATCCATTTGCAACATTTAAACTACTGTATTTCTTTCTGCATTGTTTCTAG
Seq C2 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241:ENSRNOT00000008464:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]