HsaINT0099917 @ hg38
Intron Retention
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159762880-159764674:+
Coord C1 exon
chr2:159762880-159762993
Coord A exon
chr2:159762994-159764625
Coord C2 exon
chr2:159764626-159764674
Length
1632 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
TCTTTCTGCATTGTTTCTAGTTT
3' ss Score
7.85
Exon sequences
Seq C1 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGA
Seq A exon
GTAAGTAATAATGAAGTTGGGGAGAGGGAGGGTATGATGCAGCAAGTGTATGCCTTGGAAAGCAGATTGTTTCATATGTTGACATCTTATTTCCTTTGGGAAGCTTTTATTTTTTAAATGTTTCTTAAAAATAAAGATACCGTAGATTTAATGGAAATTGCTGTCTTCTATAACAAGCAGCCTGATTTTCTCATAAAGTTATTTTAGAGAAAGAAGTAATTTTCTAGCTCTCAAAGGTAATTGGAATGTATTTCATTGAAAAACAGAATTGGAAACATCGAGGGAAAATGGGCTTTTTATTATTAAAACAAAACCTCAGTATTATCACTTAGAAACCTGAAATTGAACTCCAAAAGCCAAAGAGTATGGGAAATTAACTTCAATTTATTTGTTACTGTTCTACAAAAGATTACCAGTGTACTAATTTTTAAGTGTCCATATTACAAAGTATTTTAGATATGGAATAGTTGGTTGTTTACTGTGTGTGCTATTAGCCATAATACAACATTTTGGCCAGCTGTATGTTAGGTATTTATAAGTAAATGATGCTCTTTGTGTCAGTGTACCAGAGGAAACTTTATGCTTTGCTGTCTGGGCCATTTTGTGTAGCAAGGGCTAGGGTCTCTATGTATCTGCCATTATTGTAGCATTCTGAACACTTCATGTCTTGAAATGTGTTCATAAGTATATCCTTCAAACTTTCTTACATGTTAACTTCGGTGATAAAAGTGTAGTAGAGTTCATGTAATGTTTTTATTTTGAAAATTATCAAATAACTGCAATTCAATGTATGTAATACTCCTTCTAAATTAGTAAAAAATTTTTCTTTATTTTATCATGTGGACATTATTCCAGTGAGCTGGTTAACAGATAATTACCATTGAAGAGCATTCATATTATCTATCAAGAGCATTCAGAATTTGAGCAAAGATCTCTTGACTTCTAAGTACTTTACAAATTGTGAGCCCCTAAAACCTTAATACCGTAAAATGATTTCTAAAAAGGTACCTTAAGTCTTCAGGATGAATAAACCATATAAAACATTTAAGAACTTCTGAATTCATGTGTTTTTAAAAGTTCATATTAACAAGTTTTACAGTGGAAAATTACAGAATTTTGGATGATACTCCAAAGTGGAAGTCATTAGGATTTTTTTTAATGTATAGAACTGTATACTTTTATCAAATTTAGGTAGGAAAATATTGGTTCTTGGGAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCCCACTGAAACTGAATTTATTTGGGTCCAAATACAAGGGTGGTTTTTTGTTTTTTGTTTTTTTTCCTCCATTTCGTAATTTTTTGAAGTGTTTATAAGAAGACAATATCATTGGATAAAATTATTGTATCTGCTCCCAATTTTAAAAAACTGGTTTCTACATGATTATAAAGATTATATAAAACATTTAAAAATTAATGCCATTAAGCTTGTGATTTTTGATGTTAGGGGGAGAAAAACCCCTATTTAAAGGCTTAAACTGATGTTTGACTTTTTAAGTAGAAATGAATCTCCTATACTGATTCTCTCTTTAGATCCATTTGCAACATTTAAACTACTGTATTTCTTTCTGCATTGTTTCTAG
Seq C2 exon
TTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536:ENST00000259050:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development