BtaEX0022000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47512685-47514816:+
Coord C1 exon
chr19:47512685-47512776
Coord A exon
chr19:47513590-47513633
Coord C2 exon
chr19:47514461-47514816
Length
44 bp
Sequences
Splice sites
3' ss Seq
CCAATATCCTCTTTTTACAGTTA
3' ss Score
7.93
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGACAACGTGGAGTGGTCGGAGGAGCAGGCCGCGGAGGCAGAAAGGAAAGTCCAGGAGAACAGCACTCAGCGGGTGTGCCAGGAGAAGCAAG
Seq A exon
TTAAAGAAACTTGGACTTCAGGACATTAAGTGCCTTGCCCAGAG
Seq C2 exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.778 C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.4=24.4)
Main Inclusion Isoform:
ENSBTAT00000012443fB4227
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGAGAACAGCACTCAG
R:
GCTCTGGGAATTCAGTAAAAAGCC
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development