MmuEX0028740 @ mm10
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105126776-105129075:+
Coord C1 exon
chr11:105126776-105126867
Coord A exon
chr11:105127795-105127963
Coord C2 exon
chr11:105128741-105129075
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCAGTATCCTCTTTTCGCAGTTA
3' ss Score
6.24
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
Seq A exon
TTAAAGGACCAGTTAGCCAAGTGCAGTGGTGTATTCCTGTAGACTCAGCTCCGTGGGAGGCTGAGGCAGAAGGATCACTGAATTGGAGGCCATCCTGGGCAGCATAGGGTGATCTAGTCTCCAAAACGATTAAACTTGGACCACGGGGCCTTAAGTGCTTTGCCTAGAG
Seq C2 exon
TTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAGAATCCATGAAAATGGGTTTTTCAAGGATAGACACTGGCTTTTTACTGAGTTCCCTGAATTGGCACCTAGCCACAGTCACCTGACGGGTGTACCCTTGGAGAAGCAGAGGAGTGACGTCTGTGAGGACGGACCTGGCTTGACAGCAGAACAGCACAAGTGTTCTTGTGCCAGCCCTGGATGTGAGACTCAGGTGCCTCCCTTGGAAGAGCCAGTGACTCAGAAGCTCGGTCACCTAGAAATTAGTGGTGAGGAATTTCCTGGCTCCTCTGCCACCTACCGAATACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'2-2,'2-1,4-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.257 C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.0=25.0)
Main Inclusion Isoform:
ENSMUST00000021030fB2445
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGAAGTGGTCCGAG
R:
ACAGACGTCACTCCTCTGCTT
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types