MmuINT0098030 @ mm10
Intron Retention
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105126776-105129075:+
Coord C1 exon
chr11:105126776-105126867
Coord A exon
chr11:105126868-105128740
Coord C2 exon
chr11:105128741-105129075
Length
1873 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TCTTTCTTAAATGTTTGCAGTTG
3' ss Score
7.26
Exon sequences
Seq C1 exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
Seq A exon
GTGCGCTCCGTTGTGCCCGCAGTGTGGGACGCGCCTCCTCCAGACGGCAAGAAAAATGGGGGCACCGGGATCGTTTTATCACTGACCTGATGGAGAACTCCGGCCCAGAACGGGTCGGGGAGGGGACGGGTTAGGAGGCAAAGGGGCTGTCTTCTAACAAAGTCTTGAAGCCATTGGGGTTGGACTTTGTTGTTGTTGTTGTTGAACTCTCTAGTTCTACGAGTGTCGCGTTGATGTGGCTGGCCTGTGGCAACCGTAAAGTCGTTCAGTCATCTTAGGGTAGCTTCTACAGTTTACCTTCTGCTGGGACGTTTCCATCAGAGCTAGATTGATGTGGTCGGATCCTAACGTACTGTGGGAGGAGAGGATTAGATCATAACATCTTTTCTTGAGGTGTTGGGTTTGGAGATGTGGGACTTCTACCAAAGAAAGATGCGTGCAGCAGAGTGGAGAGACGAGTCTGCTCAAAGCGAAAGAGGTCATTTCCGAAGACAAGAATAATTCCTTTATAAAATACTAGAACTGGTTGTCCCTGTTTCTAGGAGGCGTTTGAAAGTAAACCTGGAACTTTAAGGTAATAGGCATCAGGGGGTTGGAGAGATGGCTCATCGGTTATGATAATAAGCACTGATAGTTTCTCTATAGTACCGAGGTCACTGGCCAGGCACGTACCTCCTAAGATGTAGGGGTGTAATCTCTTGGGAGGCAGAGACAAGAGGTTGAGTGGGGTCAAGAGCATCCTTGCTACGTAGAGTTCCACTCCTGCCTGGGCTGCATGAGAGCTTGTCTCAAAAATAAGTATATGTATATATTCCAGTTGCAAAGTAGGCACCCTGCCTGCATTGTTAGGTAGATAAGACTAGATAAAGCTTCGTAGAGTTGAGAGGGATTTTGAAAATCATGTAGCCCAGTATCCTCTTTTCGCAGTTAAAGGACCAGTTAGCCAAGTGCAGTGGTGTATTCCTGTAGACTCAGCTCCGTGGGAGGCTGAGGCAGAAGGATCACTGAATTGGAGGCCATCCTGGGCAGCATAGGGTGATCTAGTCTCCAAAACGATTAAACTTGGACCACGGGGCCTTAAGTGCTTTGCCTAGAGGTAAGCAGTCAGTGGTGGATTCCAATTTCTCAGGTTTTTATTCTTTCATCAATTCTAGTCCAGGTCTCTTGTGTTGACAACGAGCAGAAAAAGAGCCCCTATCAGTCTCCTGATTAATCAAAACTCTTCTTGCTTCTGGAAGGCAGTTTCCCATTGTCTAGTTTTGTGTGTTTTCTGGTTATTTATTTTAGTATTCATTAGCAATCTTGACTTTGTGCCTGGCCCCTGCATTCTAAAGAAGCAGGAACATGCCTTCTGAAAAGCTTCGTGGATGACAGTCACTGAATGTATACAAACGTCCAAAGAACCTGGGACATTTAGCTTGTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAACTTACAAGGGAAAATAATTACCACACACACCAAAGAACCTGTCTGTCCCTGACGAGTAGAACCTTGAAACCAAGAAGAATTAGGTCTTTACTTCTGTGCAATGCTAGGGATTTGCTTAATTTCATAATTTTCCTGTAGTTGAAGGCCATCCAAAGCTGTGTGAGGAAAATGATGGGTAGCTAACTCCCTGTCTGGTGGTTCCAGCAGAAGCTGGGTTTCCTGGGGATGAAAAGTGAATGACCTTAATGTAAGATAGATAGCAAGATGATTACCAGTGGAGGTGTCCAGTTCTGAGACTATGACTGTTCTTAAGCATACTTCTGGATAAAACGACATTTGGTGATGCAGGACAGTTGACATTAGATATAAATAAAATATTTGAGACTGACGTTTAATATTCTTTCTTAAATGTTTGCAG
Seq C2 exon
TTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAGAATCCATGAAAATGGGTTTTTCAAGGATAGACACTGGCTTTTTACTGAGTTCCCTGAATTGGCACCTAGCCACAGTCACCTGACGGGTGTACCCTTGGAGAAGCAGAGGAGTGACGTCTGTGAGGACGGACCTGGCTTGACAGCAGAACAGCACAAGTGTTCTTGTGCCAGCCCTGGATGTGAGACTCAGGTGCCTCCCTTGGAAGAGCCAGTGACTCAGAAGCTCGGTCACCTAGAAATTAGTGGTGAGGAATTTCCTGGCTCCTCTGCCACCTACCGAATACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691:ENSMUST00000021030:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134891=Methyltransf_23=PU(15.0=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGAAGTGGTCCGAG
R:
TCACTGGCTCTTCCAAGGGAG
Band lengths:
352-2225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types