BtaINT0092008 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47512685-47514816:+
Coord C1 exon
chr19:47512685-47512776
Coord A exon
chr19:47512777-47514460
Coord C2 exon
chr19:47514461-47514816
Length
1684 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TCTTTCTTAAATATTTACAGCTG
3' ss Score
8.06
Exon sequences
Seq C1 exon
GGACAACGTGGAGTGGTCGGAGGAGCAGGCCGCGGAGGCAGAAAGGAAAGTCCAGGAGAACAGCACTCAGCGGGTGTGCCAGGAGAAGCAAG
Seq A exon
GTGCGCCCGGGTGGACCCTCAGTGATATTGACAGCCTGCGTACTGCTGGACGTGCTCTCCGGAGAGGCCAGAGAACCGAGGCCCCGAGAGTCTTTGTTACTAGTCTGATACAGAACTCTGGGATAGAACGAGAAGGCGAGGGGTTGGGCAAGGCTGGGAAAGGGCTGTGCCTTGAGATCTTGTTAGGGCATAAAGGGTGTTTTGGTTTTGATTTGTTGTTTGGAAGAGGATAACTGTATCTCGATAGCATTTTCTAGTGACTTAAGTCTTTAATTCTGTTGACTAGACCCATATCAATATGACTGACCTGTGGCAACATGATTGTCTTGGAGGATATACTTTCTATTGTCATTACATTTTGCCAGAGGAAATGTTGCCATTACAGCTGGATTCAAGTGATCAGATTCTAAATAATGGGGGGTGGGGGGCGGCTGGCTAATGAATCGTGAGTTATGTGTCTTTTCCTTGTGTGGTGGCTATGAGGTGGTACGGCTTCTGCAAAGGAAAGATGGATGAATCAGAGTGGAAATAAGTCTGGGCAAAGGAAAAGAGGCCTCTTCTGAAGAGGTGGATGATTTCACTGAAAAATACACCTAGTTAGTAAAACTAGGACTAGTTGGGCCTGTGTTCTAAGTGACAGTTGAAGGTGGCACTAGAAATTGCAGAGTAGTACCCACAGAAATAGTTCTGAACAAGTAGAAGAGTCCAGTTATGGAATATTAACCTTACATAGTTTGACAAAGACTACATCAAACCAAATTAAGGTTGAGAGGGATTTTGAAAATCATATAGTCCAATATCCTCTTTTTACAGTTAAAGAAACTTGGACTTCAGGACATTAAGTGCCTTGCCCAGAGGTAAGCAGTTTAGTTAGTAGTGGTGGAATTGAGATCCAATTTCTTAGGTTTTTCTTGTTCTACTACACTAGTCAAGGCCCTGTATTGGCAAAGAGCAGAAAGCTAAAATCTAGTTATAAGCCAGTGTTATCTCAAAAATAAAAAGTAAAACTGAAATCTAGGACTGCCTTGATCACCTTCAACAACACAGGTTTCTTTTAAACAGTCCATACTTTAGTCTGTCCTGTCCTCTATCATCAGATCTTCTCATCGAAACACTTTTCCTCTTGTCATCATTTTCTGTTTCCATGCTTGGTATCTGTTAGTAGTGAATTCATTTCTGGGCTCCACACTAAAGAACCACAGACATAGGAATATAATGTAAAGAAGATAGAGTATCATACCTGTACTATAACCATTGACTTCACGTGGGGAATAACTGAAGAACCTGGGGCATTTAGCTTGTAAAAGAGGTTTTAAAAAGGGAAATAATTATCCTCAAATACGAAAGAGCTGTTCTGTATGAGAGAGAGTAGGATCTTTTGACCAGAAATGATTAGACATATTTTTTGCTTAATATTAGAATTTTCTAATAGTTAAGAGCCATCTAAAGATGTGGGAGGAGAATTGATAGGTAGTAAGTTTTCTGGCAGAAGTTGAACTCCCTGGAAGGAAAGATACAGAGCAAATTCAAGTGTGATAGGATCAAATGACCACCAGCTCTGAGACTGAGGTTCTACTTGAGTATAACTTTTGGTATAAAATTTGGTGAAGCAGGGTGGTAATTTATATTGTATACAAATAAAACTGAGAGATGGTTCTTAAAATTCTTTCTTAAATATTTACAG
Seq C2 exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134891=Methyltransf_23=PU(15.4=24.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGGAGAACAGCACTCA
R:
CAGGTGATGGAGCTTCTGAGT
Band lengths:
346-2030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development