BtaEX0022223 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039186 | MGC151949
Description
Bos taurus glycoprotein galactosyltransferase alpha 1, 3-like (LOC527409), mRNA. [Source:RefSeq mRNA;Acc:NM_001077974]
Coordinates
chr11:92266803-92278566:-
Coord C1 exon
chr11:92278481-92278566
Coord A exon
chr11:92274118-92274171
Coord C2 exon
chr11:92266803-92266943
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCATTATTTTTCCTAATAGGTC
3' ss Score
9.53
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GACAGAATGAGATACCAAAGGAAAACAATTCAAGGGTTATTATTTTTATTGTTTCTGTGGACCTTTCAGAGAATGTATCATTTCAG
Seq A exon
GTCTGAGAATACTCAAACAGAAGAATTAAAGCTATCAGACTGGTTTTTTCCCAA
Seq C2 exon
TGCCATAAATCACTCAAACATAACAACTACCAGTTGGGCAGCTCCAGTTGTGTGGCATGGCACTTATGATGAAGTGGTGCTGGAAAATTATTACGCAAATCATAAAATTACTGTGGGGTTAACTGTGTTTGCTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039186_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(4.1=48.1)
A:
PF034148=Glyco_transf_6=FE(5.7=100)
C2:
PF034148=Glyco_transf_6=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGGAAAACAATTCAAGGGT
R:
TAAGTGCCATGCCACACAACT
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development