MmuEX6100858 @ mm9
Exon Skipping
Gene
ENSMUSG00000079421 | 4930402F06Rik
Description
RIKEN cDNA 4930402F06 gene [Source:MGI Symbol;Acc:MGI:1922104]
Coordinates
chr2:35235903-35245130:-
Coord C1 exon
chr2:35245098-35245130
Coord A exon
chr2:35241139-35241189
Coord C2 exon
chr2:35235903-35236046
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTATCGTTCTTTTAGGTC
3' ss Score
12.22
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CATAAAGAAACTGCAGATGACGTATCAGTGCTG
Seq A exon
GTCTCTGAAAAACCAACCAGAACTCCAGCCCTCAGACTGGTTTAACGCCAC
Seq C2 exon
AATGGACTCAACACACATGGGCATGAGAGCTACTAACTGGTCCGCTCCGATTGTGTGGACCAACACTTACAATGAGTTAGTCTTGGCAAGTTATTATAAGAAGCATCCAGTTACCGTGGGGTTGATCGTGTTTGCAGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079421-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(0.7=33.3)
A:
PF034148=Glyco_transf_6=FE(5.7=100)
C2:
PF034148=Glyco_transf_6=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGATGACGTATCAGTGC
R:
CCCACGGTAACTGGATGCTTC
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: