MmuEX6100858 @ mm10
Exon Skipping
Gene
ENSMUSG00000079421 | 4930402F06Rik
Description
RIKEN cDNA 4930402F06 gene [Source:MGI Symbol;Acc:MGI:1922104]
Coordinates
chr2:35380383-35389610:-
Coord C1 exon
chr2:35389578-35389610
Coord A exon
chr2:35385619-35385669
Coord C2 exon
chr2:35380383-35380526
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTATCGTTCTTTTAGGTC
3' ss Score
12.22
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CATAAAGAAACTGCAGATGACGTATCAGTGCTG
Seq A exon
GTCTCTGAAAAACCAACCAGAACTCCAGCCCTCAGACTGGTTTAACGCCAC
Seq C2 exon
AATGGACTCAACACACATGGGCATGAGAGCTACTAACTGGTCCGCTCCGATTGTGTGGACCAACACTTACAATGAGTTAGTCTTGGCAAGTTATTATAAGAAGCATCCAGTTACCGTGGGGTTGATCGTGTTTGCAGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079421_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(0.7=33.3)
A:
PF034148=Glyco_transf_6=FE(5.7=100)
C2:
PF034148=Glyco_transf_6=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGATGACGTATCAGTGC
R:
CCCACGGTAACTGGATGCTTC
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types