RnoEX0048856 @ rn6
Exon Skipping
Gene
ENSRNOG00000039210 | LOC502618
Description
ABO-family member 6 [Source:RGD Symbol;Acc:1560029]
Coordinates
chr3:14598790-14605223:-
Coord C1 exon
chr3:14605191-14605223
Coord A exon
chr3:14601109-14601159
Coord C2 exon
chr3:14598790-14598933
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCTTATATCTTTCATTTAGGTC
3' ss Score
10.25
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
TTTAAAGAAACTGCAGATGACGTATCAGTGCTG
Seq A exon
GTCTCTGAAAAACCAACCAGAACTACAGCTCTCAGACTGGTTTAACGCCAC
Seq C2 exon
AATGGACTCTACACGCATGGGCCTGAGAGCTACTAACTGGTCAGCCCCGATTGTGTGGACTGGCACTTACAATGAATTAGTCTTGGCAAATTATTATGAAAAGCATCCGGTTGCCGTGGGGTTGATCGTGTTTGCAGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039210-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.4=100)
A:
PF034148=Glyco_transf_6=FE(5.3=100)
C2:
PF034148=Glyco_transf_6=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGATGACGTATCAGTGC
R:
CGGCAACCGGATGCTTTTCAT
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]