BtaEX0022529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23034592-23105018:+
Coord C1 exon
chr13:23034592-23034671
Coord A exon
chr13:23080003-23080057
Coord C2 exon
chr13:23104909-23105018
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCCCCTTTTAATAGAGA
3' ss Score
7.5
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CTTGCTATGGCATTGTTCAAGTACCCACAGGACCATGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
Seq A exon
AGATGTGAACTGTGTCCTCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGCG
Seq C2 exon
GTTGGGCTCATGTGGTTTGTGCCCTGTATATACCAGAGGTACAGTTTGCCAATGTTTCTACAATGGAACCAATTGTTTTACAGTCTGTTCCACATGATCGTTATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
C2:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGCATTGTTCAAGTACCC
R:
ACATTGGCAAACTGTACCTCTGG
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development